PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G11040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 394aa    MW: 42273.7 Da    PI: 9.9985
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G11040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.1e-32231286156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   k+r++W+peLH++Fv+a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  OB07G11040.1 231 KARRCWSPELHRKFVSALQQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 286
                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.795228288IPR017930Myb domain
SuperFamilySSF466892.99E-17229289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-29229289IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-26231286IPR006447Myb domain, plants
PfamPF002491.6E-7233284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGLEVGEIGV GADLSLDLKM FAAKSVGRAR DSPASAMGDC IKRLEEEMGK IEVFRRELPL  60
CVRLLADVID VMKEEVGKKG GDREEEEEDA GDKSNWMSTA QLWSGNSGRD AADPEHLVRS  120
SQKQDKGRIS SEARSDGGGA FVPFKAVGSG APAFTRPKPS LIRKEDMAYD VRMPDLSLLS  180
PPAAPADESR RQVVGFAQAA ARAAAMAASS PALSLQAQSH SAAQQQQQAR KARRCWSPEL  240
HRKFVSALQQ LGGPQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHNRRV PSSTIVNQPI  300
VLMGGLCYIP QEQSSSQSGS PEGPLHFSGS GTAGGGSFSR PRAQPVAAAA HRWRPSAARR  360
KMAGLRAMAG NDQGVAASEI QSFGGRLRRG GDEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-14231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-14231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-14231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-14231284154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G11040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704210.0AK070421.1 Oryza sativa Japonica Group cDNA clone:J023048M12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695377.10.0PREDICTED: uncharacterized protein LOC102719878
TrEMBLJ3MI720.0J3MI72_ORYBR; Uncharacterized protein
STRINGOB07G11040.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.15e-29G2-like family protein