PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB06G26080.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 562aa MW: 61053.7 Da PI: 8.6083

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB06G26080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.2	2.8e-31	56	237	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk............lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+el+ e+L++kv+ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ OB06G26080.1 56 LPAGVKFDPTDQELI-EHLEAKVRPGGaaaggaacrhplI---DefipTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqp 147 799**********.99*99886666666665443...144434776646******.556667799**************88 PP NAM 78 ......................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ +g++ g+kk+Lv+y g+++k+ekt+Wvmh+y+l OB06G26080.1 148 paaaaavdapasgaaspggnesssssaarqqqqqhpqqRSETRWHKTGKTRPVVV-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 237 *******************************9998766889********.99********5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-34	50	145	IPR003441	NAC domain
PROSITE profile	PS51005	25.43	56	256	IPR003441	NAC domain
Pfam	PF02365	4.7E-14	57	237	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-34	191	256	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDGAAVAAEA GGGGGGGGHR RLIGSRIEEH RKYMSESSCC PRCGHKIDRK LDWVGLPAGV 60 KFDPTDQELI EHLEAKVRPG GAAAGGAACR HPLIDEFIPT IEGEDGICYT HPEKLPGVSK 120 DGLSRHFFHR PSKAYTTGTR KRRKIQPPAA AAAVDAPASG AASPGGNESS SSSAARQQQQ 180 QHPQQRSETR WHKTGKTRPV VVGGRQRGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGEA 240 EEERDGELVV SKIFYQTQPR EGGGAGAAAA ATASASVVAP GAGTGRRSTE RDRAVAAAAA 300 AAAAAAVAPM ASSNVVNAAA FHSGAIDEFS FAQFRSSFEE AGMGASSSDH QSGRADDERV 360 LRHHHQQQHH HDDEQDHRRR GHHYVGQQQC VAATFHVVSS PADPIATLIS PPPAHQGTVM 420 LRQPEPPYYH QQEDERPHQP RKFDGRSTSG LEEVIMGCTS RRSKGGETSG GKDGTEWQYP 480 SFWPSDSQDH HGDKDDIEAK QKGEAEKEKG EYDFFSLSRY TFAKKYSMYK KLNYLKIASI 540 MHGILSESKL RENFPVCSGG RI

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDGAAVAAEA GGGGGGGGHR RLIGSRIEEH RKYMSESSCC PRCGHKIDRK LDWVGLPAGV  60
KFDPTDQELI EHLEAKVRPG GAAAGGAACR HPLIDEFIPT IEGEDGICYT HPEKLPGVSK  120
DGLSRHFFHR PSKAYTTGTR KRRKIQPPAA AAAVDAPASG AASPGGNESS SSSAARQQQQ  180
QHPQQRSETR WHKTGKTRPV VVGGRQRGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGEA  240
EEERDGELVV SKIFYQTQPR EGGGAGAAAA ATASASVVAP GAGTGRRSTE RDRAVAAAAA  300
AAAAAAVAPM ASSNVVNAAA FHSGAIDEFS FAQFRSSFEE AGMGASSSDH QSGRADDERV  360
LRHHHQQQHH HDDEQDHRRR GHHYVGQQQC VAATFHVVSS PADPIATLIS PPPAHQGTVM  420
LRQPEPPYYH QQEDERPHQP RKFDGRSTSG LEEVIMGCTS RRSKGGETSG GKDGTEWQYP  480
SFWPSDSQDH HGDKDDIEAK QKGEAEKEKG EYDFFSLSRY TFAKKYSMYK KLNYLKIASI  540
MHGILSESKL RENFPVCSGG RI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB06G26080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003713	1e-113	AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
GenBank	AP014962	1e-113	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-113	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641895.1	0.0	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	1e-123	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	J3MF14	0.0	J3MF14_ORYBR; Uncharacterized protein
STRING	OB06G26080.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	4e-98	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]