PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G25370.1
Common NameLOC102715027
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 551aa    MW: 58797.8 Da    PI: 6.7502
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G25370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.9e-31118171255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  OB06G25370.1 118 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 171
                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.601114174IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-29114172IPR009057Homeodomain-like
SuperFamilySSF466895.55E-14117172IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-22118173IPR006447Myb domain, plants
PfamPF002499.7E-9119170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MGEVKEKEVV EIFEHDHDKI RSPENSLPPA MVLDLNEGFG EGSEEGEVGE DGDEEDDDDD  60
DDGGSTSEVA GGGGRSSSNN SSTNHNSKDH EMNSSSSSSK ADGDRVPTVR QYNRSKLPRL  120
RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLDHESGH  180
ERGAISSVFS PMEFNMRRGE HRFHHDMFFQ RAAAGAAAGA GSSPFSPRLL RENGGGFFAS  240
RNPGLPEASR LYGLFQRRQQ APMQTFDFKN CNSFRNQDWA FNQHAAARAA AAAVSDHGPA  300
KGLIHEMIFR KDGKLTSHLF DVREAIISTR VSSATTGATV DHPLDGAGKA GTFDWVGSSS  360
RSLSRTMSAA ATMGAAAFAA GDHHLRRRGA VGGGNVTSSD PVVSSEALGS LLERAKTKAN  420
DAMRFETILA KTTTAAAAAE NGRTPDLQLS LSPNAGDHTH SGGRASKKRK RIAASFLDEQ  480
EVDSDKQQLA LSLSLSLRGG DNGGRGGGDG GCRGGDAGRL EEEETAGSSS SKKAALGLST  540
LDLTMSIKAL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-18119173357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G25370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736060.0AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656146.10.0PREDICTED: uncharacterized protein LOC102715027
TrEMBLJ3MEU30.0J3MEU3_ORYBR; Uncharacterized protein
STRINGOB06G25370.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.18e-34G2-like family protein