PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G24150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21458.3 Da    PI: 10.0572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G24150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.81.6e-192061243
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   ie k +rqvtf+kRr g++KKA+ELS+L++a+ a++++s+ 
  OB06G24150.1 20 HIETKGRRQVTFTKRRSGLFKKASELSILTGARLALVVLSEA 61
                  5999************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.76E-231185IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-231170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.9971171IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-161333IPR002100Transcription factor, MADS-box
PfamPF003195.3E-192167IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-163348IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-164869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MVRPHGVRTS MGRQRIEIRH IETKGRRQVT FTKRRSGLFK KASELSILTG ARLALVVLSE  60
ARNAFCFGDP SVDAVLRCYA PVLGVDADAA ARPVASSSHV HGAANDGDDR HEELRRAAED  120
TKSQVAAEKS RLREVAKKIA DAKADRQFWW EADVEALGEA ELPEFARALE KLMANVRRHA  180
DDRLSGPGQP QPQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G24150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656125.11e-134PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLJ3MEH11e-138J3MEH1_ORYBR; Uncharacterized protein
STRINGOB06G24150.11e-139(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-26AGAMOUS-like 62