PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G13740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 21988.1 Da PI: 3.8143 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.4 | 8.2e-09 | 1 | 26 | 31 | 56 |
AP2 31 fslgkfgtaeeAakaaiaarkklege 56 ++lg+f+taeeAa+ +++a+ +l+g+ OB06G13740.1 1 VWLGTFDTAEEAARVYDHAAIRLHGP 26 7***********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-14 | 1 | 33 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-5 | 1 | 39 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-10 | 1 | 34 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.419 | 1 | 33 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.52E-17 | 1 | 34 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
VWLGTFDTAE EAARVYDHAA IRLHGPSATT NFPVPRAALP SPPPPPPLLA ANAAAASGYD 60 ESSDESQLVT SPVSVLRSMP AQKPATATPK KEAREEDDCA GHTHKNPSPD DMFSQFTGDA 120 LNISPPDDDM FDGISFGDPT PPAPWFDDDC MTPLGHVSTD DEYPMMSTSL LDDDLGDLPP 180 WPEVESLFSN DIIGDEPVAA EPHPPL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G13740.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642210.2 | 7e-71 | ethylene-responsive transcription factor 11 | ||||
TrEMBL | J3MBI0 | 1e-145 | J3MBI0_ORYBR; Uncharacterized protein | ||||
STRING | OB06G13740.1 | 1e-145 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13133 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25390.2 | 6e-12 | ERF family protein |