PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB05G33440.1 | ||||||||
Common Name | LOC102707403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29888.5 Da PI: 8.8527 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 117 | 168 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + k +r++lg+f ta+eAa a++ a+++++g+ OB05G33440.1 117 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATADEAALAYDMAALRMRGH 168 69*******.**********332...34**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.21E-28 | 116 | 175 | No hit | No description |
SMART | SM00380 | 1.2E-34 | 117 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-22 | 117 | 176 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.248 | 117 | 175 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-14 | 117 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 117 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MAIGAAPGSN QPRDTSNILE NVWASIMTGC TPKTSSVVSM ASEEENSAIL QRLPSLGRWI 60 SMGAQEWDEL LSGPALASDS SGELKLVASP GDQDGHRQVI VVNRTTTSSS AAAACKSYRG 120 VRRRPWGKFA AEIRDTRRKG ARVWLGTFAT ADEAALAYDM AALRMRGHRA HLNFPLDTVR 180 GHLERELRAG RSDQTTATRV LRRKRRRNTT TDSAAARSAV LAADVITATN RDQMLSFASE 240 SDQISTQKCS TGDAGAIDFD EIGGEYWDYL FPPLV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-26 | 113 | 176 | 1 | 64 | ATERF1 |
3gcc_A | 1e-26 | 113 | 176 | 1 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 202 | 206 | RKRRR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB05G33440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655590.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | J3M9S0 | 0.0 | J3M9S0_ORYBR; Uncharacterized protein | ||||
STRING | OB05G33440.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18450.1 | 3e-18 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102707403 |