PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G12510.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 301aa    MW: 32810.5 Da    PI: 6.376
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G12510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.51.3e-18260296237
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                   +Dg++WrKYGqK+ kg+++pr+YYrCt+a +Cpv+k+
  OB05G12510.1 260 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAsQCPVRKQ 296
                   7***************************99******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-19244296IPR003657WRKY domain
SuperFamilySSF1182907.85E-17252296IPR003657WRKY domain
PROSITE profilePS5081118.613254296IPR003657WRKY domain
SMARTSM007741.6E-10259301IPR003657WRKY domain
PfamPF031062.1E-15261296IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDMMVQLKQS EEEEERGFFG REIKELDFFS AAGRRRVDDR DGGGDRADGV SNHAGSMVST  60
ALDLLTAVND DGGEEKKGES NNDHQTKMDS AATVEGELRQ AGEENRRLRR RLEELTTSYG  120
ALSHQLVEAQ QHKQVYVPKA SLFEFCDRKE SYVHTAVVAG VQLLDALAAA SSSPASPLRR  180
RAAAVDGDRT DSDGGEAGVE NVDSAPPCLG SKRPATLTRL TPERGGAENN AGEQQAAAEM  240
APCRKARVSV RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMASQ CPVRKQGLWL  300
S
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G12510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0934902e-41AC093490.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1127_B08, complete sequence.
GenBankAP0149612e-41AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-41CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654970.11e-159PREDICTED: WRKY transcription factor 6-like
TrEMBLJ3M3S70.0J3M3S7_ORYBR; Uncharacterized protein
STRINGOB05G12510.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.18e-32WRKY family protein