PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G33830.1
Common NameLOC102703771
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 99aa    MW: 10711 Da    PI: 8.5371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G33830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.8e-0724661454
                  HHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
           HLH 14 driNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54
                  d+i + +++L+ llP++s  ++++ + s a +L++++ YI+sL
  OB04G33830.1 24 DQITELLSKLQALLPESSqaRNGAHRGSAARVLQETCSYIRSL 66
                  6899************8867777778***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.8261066IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-82485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-92470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-42466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MSSSRRSRSR RAGSSPLSSS ISEDQITELL SKLQALLPES SQARNGAHRG SAARVLQETC  60
SYIRSLHQEV DNLSETLAQL LASPDVTSDQ AAVIRSLLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G33830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732873e-77AK373287.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652899.18e-63PREDICTED: transcription factor ILI1
SwissprotA2XY477e-46ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7427e-46ILI1_ORYSJ; Transcription factor ILI1
TrEMBLJ3M1V82e-61J3M1V8_ORYBR; Uncharacterized protein
STRINGOB04G33830.13e-62(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.11e-24bHLH family protein