PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G25360.1 | ||||||||
Common Name | LOC102704887 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 32484.1 Da PI: 6.3489 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed llv+ v+q+G g+W+++++ g++R++k+c++rw +yl OB04G25360.1 23 KGPWTSQEDALLVEHVRQHGEGRWNSVSKLTGLKRSGKSCRLRWVNYL 70 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.5e-17 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ OB04G25360.1 76 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.518 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.45E-29 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.91E-11 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 25.396 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 76 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-24 | 78 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.54E-10 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAAEVQSAGW GRHEQQDGGA WRKGPWTSQE DALLVEHVRQ HGEGRWNSVS KLTGLKRSGK 60 SCRLRWVNYL RPDLKRGKIT PQEESIIVQL HALWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKGKPSKNI ERARARFLKQ RREMQESQLQ RQQQAPTPQS KDDDDVVVVA VAEARGSWTD 180 DDDVMGGAAV APPPSSPTPT PTPGREAEEL IMHQDAMDDL MLCPAMSYHL LLLHGAAGHH 240 QLSDGGGGGS CCASTSEDQY GSSEEDGATW GSLWNLDGVV VDADADAAAG ACTLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-26 | 23 | 123 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G25360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 0.0 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691883.1 | 0.0 | PREDICTED: myb-related protein MYBAS2 | ||||
TrEMBL | J3LZG1 | 0.0 | J3LZG1_ORYBR; Uncharacterized protein | ||||
STRING | OB04G25360.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 5e-66 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Entrez Gene | 102704887 |