PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G24520.1 | ||||||||
Common Name | LOC102715009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 276aa MW: 30103.1 Da PI: 10.1767 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35 | 3.1e-11 | 76 | 134 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l+ l+se+ OB04G24520.1 76 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSEN 134 9************************************************9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.9E-18 | 72 | 136 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.139 | 74 | 137 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.62E-11 | 76 | 131 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-11 | 76 | 131 | No hit | No description |
Pfam | PF00170 | 1.1E-9 | 76 | 134 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.63E-21 | 77 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MFEMLFLEAG GKLESPEPAA PLPPPPAPPR HQHSMSMDGS TSLASSAAGV AGRMGADAKK 60 AISDAKLAEL ALVDPKRAKR ILANRQSAAR SKERKMRYIA ELERKVQTLQ TEATTLSAQL 120 SMLQRDTTGL TSENSDLKIR VQTMEQQVRL QDALNDRLRD EIQKLKVATG QVNTSCGKVG 180 NFGLSSFGSA NPQGYQRSHI QSLLAAQQLQ QLQIHSQHQQ QQMHLQQQQQ HLSTLQQQLL 240 QESLPLPGDL KMKGIAAASH AQNAGASESH ALRSEP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G24520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064429 | 1e-146 | AK064429.1 Oryza sativa Japonica Group cDNA clone:002-110-C11, full insert sequence. | |||
GenBank | AL606627 | 1e-146 | AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence. | |||
GenBank | AP014960 | 1e-146 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-146 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855196 | 1e-146 | CR855196.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652465.1 | 0.0 | PREDICTED: transcription factor RF2a-like | ||||
Swissprot | Q04088 | 5e-69 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | J3LZ77 | 0.0 | J3LZ77_ORYBR; Uncharacterized protein | ||||
STRING | OB04G24520.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12302 | 29 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 3e-69 | bZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102715009 |
Publications ? help Back to Top | |||
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