PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G18670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 396aa    MW: 42726.4 Da    PI: 8.8904
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G18670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.14.7e-18998186
      trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                  +Wt+  +  L++ ++++ e+l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++ ++  + + s++p+f+++e
  OB04G18670.1  9 EWTDGAISSLLDSYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKGSGGKSVEQCKNKIDNLKKRYKVECQRLGGAGPSAASHWPWFKKME 98
                  5*************************************87754444579************************99999999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.7E-207100No hitNo description
Gene3DG3DSA:3.40.1160.103.3E-72153389IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536338.12E-55154389IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.982154390IPR015963Uridylate kinase, bacteria
PfamPF006962.0E-18157369IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.03E-115157390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEYRKDREEW TDGAISSLLD SYTDRFEQLN RGNLRGRDWE DVAAAVTDGQ GKGSGGKSVE  60
QCKNKIDNLK KRYKVECQRL GGAGPSAASH WPWFKKMEQI VGNSSSPASS KAPVISDDDK  120
SRQQQQNSSK RYAPSGSGTP TLGGGSRLAP LSNPKWKRVL LKIGGTALAG APPQNVDPKI  180
IMLIAREVQV ACRHGVEVSI VVGGRNIFCG DTWVSATGTD RASTYPIGMM ASVMNAVLLQ  240
ASLEKIGVET RVQTALMMQE VAEPYIRRRA IRHLEKGRVV IFGGIGAGNG NPLFTTDTAA  300
ALRASEINAD VVLKGTAGDD DYGCPPRSNS NPQFEHISFR ELAARGISRM DMTAITCCQE  360
NNIPVVIFNM LEPGNISKAI CGDQVGTLVD QSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A5e-631513894239Uridylate kinase
3ek5_B5e-631513894239Uridylate kinase
3ek5_C5e-631513894239Uridylate kinase
3ek5_D5e-631513894239Uridylate kinase
3ek5_E5e-631513894239Uridylate kinase
3ek5_F5e-631513894239Uridylate kinase
3ek6_A5e-631513894239Uridylate kinase
3ek6_B5e-631513894239Uridylate kinase
3ek6_C5e-631513894239Uridylate kinase
3ek6_D5e-631513894239Uridylate kinase
3ek6_E5e-631513894239Uridylate kinase
3ek6_F5e-631513894239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G18670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087570.0AK108757.1 Oryza sativa Japonica Group cDNA clone:002-150-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691442.10.0PREDICTED: uridylate kinase, partial
SwissprotQ7VD613e-83PYRH_PROMA; Uridylate kinase
TrEMBLJ3LXJ20.0J3LXJ2_ORYBR; Uncharacterized protein
STRINGOB04G18670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-162Trihelix family protein