PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G48510.1
Common NameLOC102721630
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 365aa    MW: 38763.3 Da    PI: 7.176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G48510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.5e-31176234259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  OB03G48510.1 176 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 234
                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247170236IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30173236IPR003657WRKY domain
SuperFamilySSF1182901.57E-26174236IPR003657WRKY domain
SMARTSM007744.3E-38175235IPR003657WRKY domain
PfamPF031067.9E-26177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDMTEEEANA ASAVQAAAGD LADVVARANA RHHHSPLPPP PPMPPHQYYP TIPYDHLQGA  60
SELHRPTSIG YSDAAAVFGT GAAPSTVDYS YQLPPSGGYG MPRPLAVQIS QCGDVVMAGA  120
AAGAADDGED ATRISPLTPS AHHQMMKRKN EVKKVVCIPA PPATSGRGGG GEVIPSDLWA  180
WRKYGQKPIK GSPYPRGYYR CSSSKGCMAR KQVERSRSDP NMLVITYTAE HNHPWPMQRN  240
VLAGYARSHH THASTSGSRH HHKLPAALQI TPCTSSSSSS SSSSCNLYAD VLGGQHANMM  300
MMTTEAAAAG LGNGGGLQSA AADEVFAELE ELEPDSGINP TMINANMVYS MTSSSSSYDH  360
QRHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-24149236279Disease resistance protein RRS1
5w3x_D2e-24149236279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G48510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097951e-165AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650925.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotQ9SA805e-54WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLJ3LUX50.0J3LUX5_ORYBR; Uncharacterized protein
STRINGOB03G48510.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.19e-55WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]