PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G42230.1
Common NameLOC102710679
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 351aa    MW: 37602.3 Da    PI: 7.4702
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G42230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.7e-32227282156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   k r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  OB03G42230.1 227 KSRRCWSPELHRQFVAALQQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 282
                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.681224284IPR017930Myb domain
SuperFamilySSF466895.91E-17225285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28225285IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-26227282IPR006447Myb domain, plants
PfamPF002496.0E-7229280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGLDVGEIGM GLDLSLDLKM FAARSAVKMA AAAAKEEAAS GVDACIRSLE EERRKIEMFR  60
RELPLCARLL ADVIELMKEE AGKRRKDGDA AAAAAEARAE DGDKTKWMST AQLWVDSRGS  120
DSDSENERRS GSTSPASRLL GGAEESSRSV GSVGPTPYFR REDRVGLRPA MPLLPPVAHR  180
SPPPAAAAAA GDDHRHVVAT SFARDVPSPV PAVSLQTQAQ QQQQARKSRR CWSPELHRQF  240
VAALQQLGGP QVATPKQIRE VMKVDGLTND EVKSHLQKYR LHNRKSPGTS PASQSIVLVG  300
DLWVPQEVSC SQSGSPQGPL QLSGSGVAVS AATAGDSCCE DDDKSEGYVR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-13227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13227280154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13227280154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G42230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056250.0AK105625.1 Oryza sativa Japonica Group cDNA clone:001-200-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650642.10.0PREDICTED: uncharacterized protein LOC102710679
TrEMBLJ3LT470.0J3LT47_ORYBR; Uncharacterized protein
STRINGOB03G42230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.13e-36G2-like family protein