PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G41500.1 | ||||||||
Common Name | LOC102722659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 26874.3 Da PI: 6.5223 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.5e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss OB03G41500.1 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59 9***********************************************96 PP | |||||||
2 | K-box | 94.7 | 1.6e-31 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++ ++ ++++ +qe+ +Lk+++e Lq++qR+llGedL +L+ eL qLe q+ + lk+iRs+K+++l++++ +l++ke++lq++n L++kl+e OB03G41500.1 78 QDASAPASDEMQNNYQEYVNLKAQVEVLQHSQRNLLGEDLAPLNTDELDQLEGQVVRTLKQIRSRKTQVLVDELCDLKRKEQMLQDANSVLKRKLDE 174 4455578889************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.23E-41 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 8.89E-31 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.1E-28 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.757 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS 60 SNMLKTLERY QRYIYASQDA SAPASDEMQN NYQEYVNLKA QVEVLQHSQR NLLGEDLAPL 120 NTDELDQLEG QVVRTLKQIR SRKTQVLVDE LCDLKRKEQM LQDANSVLKR KLDEIDVETP 180 SPQPTWNGNC TGNSGGGGGG VFSSEPPQPE HFFQALGFHA VDVNQPPAPP PGGYPPEWMA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 6e-20 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 6e-20 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 6e-20 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 6e-20 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G41500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB003324 | 0.0 | AB003324.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:E31254. | |||
GenBank | AY551917 | 0.0 | AY551917.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS212 mRNA, complete cds. | |||
GenBank | AY551922 | 0.0 | AY551922.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS217 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650603.1 | 1e-180 | PREDICTED: MADS-box transcription factor 34 | ||||
Refseq | XP_015690740.1 | 1e-180 | PREDICTED: MADS-box transcription factor 34 | ||||
Swissprot | Q6Q9H6 | 1e-141 | MAD34_ORYSJ; MADS-box transcription factor 34 | ||||
TrEMBL | J3LSX4 | 1e-179 | J3LSX4_ORYBR; Uncharacterized protein | ||||
STRING | OB03G41500.1 | 1e-179 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13618 | 26 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 1e-74 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102722659 |