PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G35340.1
Common NameLOC102718529
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 343aa    MW: 36224.7 Da    PI: 9.074
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G35340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.66.4e-31173229158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   d+p+YVNaKQy++Il+RR +Rak+e+e++l +k+rkpylheSRh+hA+rR+RgsgGrF
  OB03G35340.1 173 DAPIYVNAKQYEGILRRRRARAKAERENRL-IKGRKPYLHESRHRHAMRRARGSGGRF 229
                   68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-34171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.414172232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23175197IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.3E-28175229IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLSFKQSHEG FGHAAAAAAA TDGAGPQQQP WWAGSQLLYG EASPEEALRD GGQFQVVPGG  60
RAALDPAPAP EPEKTAVTAL TKRGGAPEVL KFSVFSGNLE PGDTGEKTRE HSATIAMQSP  120
LPEYNGRFEL GLGQSMVSSN YPCIDQCYGL LTTYAMKSMS GGRMLLPLNA PADAPIYVNA  180
KQYEGILRRR RARAKAEREN RLIKGRKPYL HESRHRHAMR RARGSGGRFL NTKKEGGAGG  240
KTMPAGGLVA PDVVHPGTRG RASSLSGSDV SSPAGGGTYD HDVVVVDADH YNSIDHHLRT  300
PFFTPLPILM DGGGGGNHAS AHAAASFRWA TAAGDGCCEL LKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-18173230260HAPB protein
4g92_A3e-18173230260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213222RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G35340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880340.0AB288034.1 Oryza sativa Japonica Group OsHAP2H mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK1063980.0AK106398.1 Oryza sativa Japonica Group cDNA clone:002-102-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650346.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
RefseqXP_015690422.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
RefseqXP_015690423.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLJ3LR580.0J3LR58_ORYBR; Uncharacterized protein
STRINGOB03G35340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-26nuclear factor Y, subunit A10