PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G22680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 25809.7 Da PI: 10.2087 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.9 | 0.0001 | 125 | 163 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +R +++ +++ L++l+ + +K + a++L++A +I++L OB03G22680.1 125 KRSQKLGDKITALQQLVSPY-----GKTDTASVLQEAAACIRQL 163 6889999**********999.....9*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.775 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.30E-4 | 125 | 168 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-8 | 125 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-5 | 125 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MLAADYELFN HLSFSPSPQN LQSPTFFTTR SSDSYLGESS MYGAGARPAF AQFSYAQPTD 60 ATSAAHLVRW TAAGERTTGD SGGGGFRGSK RLKTTAPTAA TTQGPRHGLN CHAKPRNQPA 120 KATCKRSQKL GDKITALQQL VSPYGKTDTA SVLQEAAACI RQLHHQIQIL TAPYPPGTRS 180 SSAPSQQDAG GEGTTTELRR RGLCVAAVSP AIVSLVAEGA AGHGHRRTDV EENQRRIWFG 240 NR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G22680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690670.1 | 1e-179 | PREDICTED: uncharacterized protein LOC102708511 | ||||
TrEMBL | J3LMJ2 | 1e-178 | J3LMJ2_ORYBR; Uncharacterized protein | ||||
STRING | OB03G22680.1 | 1e-179 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3758 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 7e-22 | bHLH family protein |