PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB02G30060.1 | ||||||||
Common Name | LOC102720860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 394aa MW: 43925.2 Da PI: 5.9143 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.6 | 3.9e-30 | 57 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tk 79 lp+G++F+P+d el+ e+L++k+ + ++e+i+++d i++++P++Lp +k++ ++ +fF++ +++y g+rk+r+ ++ OB02G30060.1 57 LPAGVKFDPSDLELL-EHLEQKIGIGGskphMFIDEFIPTIDndegICYSHPENLP-GMKKDGTSGHFFHRVSNAYGCGQRKRRKisscdhhivsVE 151 799************.99****876654565333334555544445**********.677888999******************8799999999888 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k++++ kg ++g kk++v+y ++r ++ k++Wvmh+y+l OB02G30060.1 152 HVRWHKTGKSKAIVE-KGVTKGWKKIMVLYksSQRGARPDKANWVMHQYHL 201 99*************.999***********4434777888*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-35 | 42 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.491 | 57 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-13 | 58 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MARSWLITGR GVAKKIRNAP HCSSRPISEL GPEAQMECPK CKHVIDNSDA AIQWPGLPAG 60 VKFDPSDLEL LEHLEQKIGI GGSKPHMFID EFIPTIDNDE GICYSHPENL PGMKKDGTSG 120 HFFHRVSNAY GCGQRKRRKI SSCDHHIVSV EHVRWHKTGK SKAIVEKGVT KGWKKIMVLY 180 KSSQRGARPD KANWVMHQYH LGADEDEKDG ELVVSKISYQ LNGKQTDKSE TENVDEESDA 240 FAARVGPKTP KTNTPQPCRL NNSPCETENY VPVLEDQEGE ESNIPIVSLK DDSGNPAWCA 300 GESHAVQEAV QTRPNLDESL HCHEVLDSFL HETLLPSDRP ILSQGRNEMP DRNLNPLYGL 360 CDLFNVDLGT PPDFQLADLQ FGSQESIGHW LDSI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB02G30060.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK121953 | 0.0 | AK121953.1 Oryza sativa Japonica Group cDNA clone:J033107L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688975.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | Q6NQK2 | 1e-79 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | J3LED9 | 0.0 | J3LED9_ORYBR; Uncharacterized protein | ||||
STRING | OB02G30060.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01600.1 | 5e-84 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102720860 |