PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB02G23600.1 | ||||||||
Common Name | LOC102721713 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29065.2 Da PI: 9.5191 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.7e-14 | 29 | 127 | 1 | 94 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f kvl+psdv+ +lv+p ++a + +++ +++d++g + W++++ +++ + + lt+GW +vk++gL +gD + F OB02G23600.1 29 FGKVLMPSDVFWVtEQLVIPDEHAGKLDIV------TKVKDREGffvimamdgmvpgKLWRFRY--WNHNSIHRLTSGWGCYVKEKGLTAGDAISFF 117 6799******975589********888433......444555555555555556777*******..****9*************************9 PP E-SSSEE..EE CS B3 84 ldgrsefelvv 94 + g+++++l++ OB02G23600.1 118 H-GTTCGRLFI 127 5.447776665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-14 | 25 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-14 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.67E-14 | 28 | 128 | No hit | No description |
Pfam | PF02362 | 7.8E-11 | 29 | 127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.98 | 30 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
METSLPLPAS IDGVEVLDDM KVVATKYLFG KVLMPSDVFW VTEQLVIPDE HAGKLDIVTK 60 VKDREGFFVI MAMDGMVPGK LWRFRYWNHN SIHRLTSGWG CYVKEKGLTA GDAISFFHGT 120 TCGRLFISCN CKRDTRTGSS SATMSHPRNE GSMPVRSRNV TSKFGGAGAQ HSRRSPRHRR 180 RSLVHPEQEP TDMPPILESM TLVPTPPPTV KRVRLFGVYI DAPPPLSFDD EPNQESNSHC 240 GRAIDRDTDL KKRRQARGD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB02G23600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648609.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os02g0455900 | ||||
Swissprot | Q6K3B1 | 3e-70 | Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900 | ||||
TrEMBL | J3LCJ3 | 0.0 | J3LCJ3_ORYBR; Uncharacterized protein | ||||
STRING | OB02G23600.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15159 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-14 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102721713 |