PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G49780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 387aa    MW: 41790.4 Da    PI: 4.7574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G49780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.7e-123385150
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50
                  k ien+ +r+ t+ +Rr g+  K +  S+LC++++ ++ f++    g++ +++
  OB01G49780.1 33 KLIENEKKRKATYKNRRDGLVQKVSQFSTLCGVDAFLVCFGPAaagGEVTTWP 85
                  569*************************************9854448899987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.4512573IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-162597IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-92586IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-62747IPR002100Transcription factor, MADS-box
CDDcd002664.34E-1827105No hitNo description
PfamPF003197.0E-153584IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-64762IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-66283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSPCIDACLF IALASLGFSA AREIMPRTKL VLKLIENEKK RKATYKNRRD GLVQKVSQFS  60
TLCGVDAFLV CFGPAAAGGE VTTWPPDRGE VLKRIASLRA LPPGKIKQVQ NTCTRLREDL  120
TAQQRALLKV QQQQSGADEV LTLWDYRFDD LSLDGLNALH DTLCETLERV HRRMAALRGV  180
HDDGASSSTF ALAAPAPHAV ALPDNDAFDF PFALSNPSAV AGALCYYPLP DTLLLPQPVP  240
CQTPCFAYQM PPPCLAYQMP PPALAAAPLE FDQSIMSGTT FMDSNPYATT NIVHGGSTAT  300
TAVLDDHGQF LAAGAGYEDD LLAHDFAFAA GSGYDLEPRV STAEVWPMNT LNDPVDGIAF  360
QQQNNSRELL PGRSSGSNFQ DVSDLAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G49780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3L6X20.0J3L6X2_ORYBR; Uncharacterized protein
STRINGOB01G49780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-12M-type_MADS family protein