PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G35240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 1950aa MW: 218078 Da PI: 5.2932 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.8e-17 | 153 | 207 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k OB01G35240.1 153 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 207 788999***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-16 | 140 | 207 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-16 | 141 | 207 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.888 | 148 | 208 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-15 | 150 | 212 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.49E-13 | 153 | 208 | No hit | No description |
Pfam | PF00046 | 3.1E-15 | 153 | 207 | IPR001356 | Homeobox domain |
SMART | SM00571 | 1.7E-14 | 728 | 787 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 14.537 | 728 | 787 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.7E-13 | 730 | 784 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.6E-15 | 904 | 972 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.2E-9 | 1129 | 1171 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 4.8E-12 | 1306 | 1378 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1950 aa Download sequence Send to blast |
MDDGDGAAGK AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX GAAAGPVSAG SAGASGSSEK PVKRMMKSPY QLEVLEKTYA VEQYPSETLR 180 AELSAKIGLS DRQLQMWFCH RRLKDRKPPT KRQRREEEAA AGPLMAPPPV LPPPTLPLAS 240 GELLISGSSP YDEPPPMPPV HSRRGAGRSS AVPRLSAPDI GRRYYEPLPV MIPPPMSSMQ 300 LTTSELRVIH SVESQLGEPL REDGPVLGIE FDPLPPGSFG APIVPEQPKQ PVRSYDTKIY 360 SRHDSKLLKG SAFFPSVEHP FVPNSIGGKR KLMVGNPPPV HPHAGSRAVH EYQFLPEQPS 420 DRYEGSSRSR YYDMPVEASN SRMSSHTPGS QLLHGSEEAA LGYPFQGQIS GSGLLPQSGR 480 PEVLPAVPTD YEMIQSNSNL NSVPVEGQYG ISQVAGFENS LLPSERRAYH DEDGSRVDRK 540 RKHNEEAKIA KEVEAHEKRI RKELEKQDMM KRKREEQMRK EMERHDRERR KEEERLLRER 600 QREQERFQRE QRREHERMEK FMQKQSRRAE KQRQKEELRK EKEAARQKAA NERATARRIA 660 REYMELVEDE RLELMELAAQ SKGLPSMLYL DSDTLQQLDS FRGMLSPFPP EVVRLKVPFS 720 IKPWTVSEDN VGNLLMVWKF SITFADFLGL SSVTLDEFIQ SLHDYDSRFL GELHIALLKS 780 IIKDIEDVSR TPSVALGVNP GGGHPQIVEG AYAWGFNIRS WQRHLNVLTW PEILRQFALS 840 AGLGPQLKKR DAEGVYSRDD NEGHDGKNVI STLRNGSAAV NAAALMKERG YTHRRRSRHR 900 LTPGTVKFAA FHVLSLEGSK GLTILEVAER IQKSGLRDLT TSKTPEASIA AALSRDTKLF 960 ERTAPSTYCV KSPYRKDPVD SEVVLSSARE KIRAFHNVLS DSEAEKEADG AERDEDSECD 1020 DADADDDPDG DDVNIDVGDG KDPLIGLKEQ DGVPITTAVD STKREEEIEG ALTQPSSLNK 1080 SGKEVLNPSL DKPSSANTSS DSPVRDSSDC HEIAPSDAED QEIDESNQGE SWVQGLAEGD 1140 YCDLSVEERL NALVALVGIA NEGNSIRAVL EERLESANAL KKQMWAEAQH DKRRTKEEFA 1200 SRVQYNSNMN LKADVNQENG TESTTTPCRN VDKDNDGNAG VVNNNNEIID HNSNAVNTSY 1260 ERNGSGQDIT ATADTLSVQQ YAYADKTRSQ LRSYIGHRAE QLFVYRSLPL GQDRRRNRYW 1320 QFSTSASPND PGSGRIFFES RDGYWRVLDS GEAFDSLVAS LDTRGSREAQ LHSMLQRIEP 1380 TFKEAIKRKN GAVVEQSAGR YLKNGAMEMI RASSRSEFGS PSSSLSGITS DSAIAFSDSF 1440 KIELGRNDVE KTAISKRADG FIRWMWRECN DLKLTCTMKC GKKRCSELIH SCTYCYQIYL 1500 AEERHCSSCH MIFKSIHNFS DHTSQCEEKR RTDHNWKMQT ADHSIPVGMR LLKLQLSTIE 1560 ASIPPEAIQP FWTDGYRKSW GVKLHSTASL EELFQMLTLL EGAIKRDYLS SDFETTKELL 1620 NLNTQDTASQ NHVGLSGSAA VLPWVPATTA AIALRMLDLD SAVSYIQNQK MERDGGDFVK 1680 PPSRFAVVKN AQELEPLEAT GFDLYDGRWV AGSGRRGRGR GSRGGGSRGG RGRSRGGRVP 1740 RGISSSSRIG FKDENESSRK NARRGRTTRG RRRGRRTVRP RQPSEGRGRS IPKENLLGSF 1800 SMLSNAKPAT VEESPRSSGA DEWGLDNRRP YIEGDENSSG SQSDQSEDNE ENGQPMDEEY 1860 DEQVPNYSRG YSGGSRPHGM IDDESEEEDE DAEGDDDGEE DDVDHAVDDV DAEMDDDDDI 1920 GDDGEDGGDG GEANADEDEG ASSYSSEYSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G35240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107129 | 0.0 | AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644502.2 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2-like | ||||
TrEMBL | J3L2R8 | 0.0 | J3L2R8_ORYBR; Uncharacterized protein | ||||
STRING | OB01G35240.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2283 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |