PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G33680.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 296aa    MW: 32776 Da    PI: 8.7728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G33680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.71.2e-15222247126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +ktelC+ + +tG C+yGd+C+FaHg
  OB01G33680.1 222 FKTELCNKWEETGACPYGDQCQFAHG 247
                   79***********************9 PP
2zf-CCCH19.12.4e-06260285126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   ykt+ Cr  +++  C+yG rC+F H+
  OB01G33680.1 260 YKTAVCRMVLAGDVCPYGHRCHFRHS 285
                   9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.5E-19216254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-10218253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601221249IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10221248IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-13222247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-8255287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-11255285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009259287IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5259286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQEALLSPVR SALELKPFAF GDQRLASSPR YFPSGDDALY RCSSPFSPTF GFSSPSPLAT  60
SYQEVADRYE LCLSHLAEAA EEAAALRREN AELRVANSDL TRRLALLSGK HTAAVAVADE  120
IRRLRLGEQK VATTNKEPTP EKLAVLPKSI SVRSTSYLKL NQQAQATATA AAHNRKPRTS  180
SNPTNNPSSQ QRAYDGVRKG DEQKEQCADA AAELEVYNQG MFKTELCNKW EETGACPYGD  240
QCQFAHGVAE LRPVIRHPRY KTAVCRMVLA GDVCPYGHRC HFRHSLTPAE RLLRRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21222285467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G33680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086580.0AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646144.10.0PREDICTED: zinc finger CCCH domain-containing protein 9
SwissprotA2ZVY51e-154C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLJ3L2B20.0J3L2B2_ORYBR; Uncharacterized protein
STRINGOB01G33680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-51C3H family protein