PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G32230.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 481aa    MW: 52948.2 Da    PI: 8.0244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G32230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH291.9e-09104127427
                   ---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   + C f++ t tCk+ d+CkF H++
  OB01G32230.1 104 KDCAFYMMTRTCKFRDSCKFDHPQ 127
                   68********************97 PP
2zf-CCCH40.54.7e-13152177227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   +++ C+ff++tG Ck+G++CkF+H++
  OB01G32230.1 152 GEPDCPFFMKTGKCKFGSKCKFNHPK 177
                   789*********************96 PP
3zf-CCCH22.81.6e-07238258727
                   SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                   +f+a+tGtCk+ ++CkF+H++
  OB01G32230.1 238 QFYAKTGTCKFLAKCKFNHPK 258
                   59*****************96 PP
4zf-CCCH40.15.9e-13310335126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   ++++ C+f++++G Ck+G++C+F+H+
  OB01G32230.1 310 PGEVDCPFYMKMGSCKFGSSCRFNHP 335
                   57899********************9 PP
5zf-CCCH37.93e-12391412526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    C+f+++tG+Ck+ drCkF+H+
  OB01G32230.1 391 VCDFYMKTGFCKFSDRCKFHHP 412
                   7********************8 PP
6zf-CCCH36.67.5e-12445468427
                   ---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   e C+f+++tG Ck+G +CkF H+p
  OB01G32230.1 445 EVCDFYMKTGVCKFGMQCKFDHPP 468
                   78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.023100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.098100128IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5104127IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807150178IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10152177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6155179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4156175IPR000571Zinc finger, CCCH-type
SMARTSM003562.5235258IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.84236259IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5238258IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-7309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957309337IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10311335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5313336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4315334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868386414IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7386413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7386414IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-10390412IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-6391412IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5441468IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737441469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6443469IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9445468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5445466IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSDSLYPYGH GAVGEGAGAA GYSSYEIDLI AARYGGGPLT NPSSAADARP VGARRSTGVR  60
YHQPIMGSHS TVEQIEALYS SNTMVKRPRL ESSLPIYPQR PGAKDCAFYM MTRTCKFRDS  120
CKFDHPQWVP EGGIPDWKEA ANLEESYPER QGEPDCPFFM KTGKCKFGSK CKFNHPKGRV  180
NALASGKGNE KHPSADSSIL PVRPSEPICS VRIHFTFFFC LYKASSLKPN FSCASVLQFY  240
AKTGTCKFLA KCKFNHPKDI EVPSDHNESE NAATVEGEKD IGAVDDSISV KMSTPIAAQE  300
FNSKGLPIRP GEVDCPFYMK MGSCKFGSSC RFNHPDRLVL NFPLGQTIIP TPESILLNPA  360
ANFMQSFDFH AARLPVGPGP IAYPQRPGAT VCDFYMKTGF CKFSDRCKFH HPIDRSAPDR  420
SVNWEPAEDS LQLTLAGLPR REDAEVCDFY MKTGVCKFGM QCKFDHPPPQ EAIAKVSNSG  480
S
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G32230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116820.0AK111682.1 Oryza sativa Japonica Group cDNA clone:J013159G03, full insert sequence.
GenBankAK1121160.0AK112116.1 Oryza sativa Japonica Group cDNA clone:002-103-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644369.10.0PREDICTED: zinc finger CCCH domain-containing protein 8-like
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLJ3L1W70.0J3L1W7_ORYBR; Uncharacterized protein
STRINGOB01G32230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-133floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]