PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G21320.1 | ||||||||
Common Name | LOC102711743 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 493aa MW: 53634.5 Da PI: 6.6559 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122 | 2.1e-38 | 116 | 176 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvPvG+grr+nk++s OB01G21320.1 116 PDKILLCPRCNSMETKFCYFNNYNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHAS 176 789999****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 113 | 173 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-31 | 118 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.22 | 120 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 122 | 158 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MAAPRQGREQ ERDDPAIKLF GRTIPLHLQP SAAAAAEEEE EVMTKLADDV KNNDDIPLVP 60 DKPLIVEDIP FCSNGSKKND LHAIGRQDGR METNSRTEDV KTEPDGSVPE KILKKPDKIL 120 LCPRCNSMET KFCYFNNYNV HQPRHFCRNC QRYWTAGGAM RNVPVGAGRR RNKHASHYRQ 180 TMMPCSNIIA TGDVSDVVHH QAITLESSVP QGTLKENEAT TKFGSEVSVC KSSASILDTR 240 EPNNNDLVPL TSGDNKEEKS CASSVAVSEN LMPDNVITKE PNNRSGCCNG VALPYPAGPS 300 LVLPWSLGWN SVAVMAATHQ STQPVLGLED RIPCPASWPL LPIAPAPGIC APVVPIPLVP 360 PLWSCFPGWP NGIWNSQCPG SNSTTVSSTP PNKISCSANN SLALGKHSRE ESLQEEEKTR 420 NNLWVPKTLR IDDPAEAAKS SIWATLGIKP DDKGIFKSFQ SNVPKNGTAP ESPQALQANP 480 AALSRSQSFQ ETT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G21320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644059.1 | 0.0 | PREDICTED: cyclic dof factor 2-like | ||||
TrEMBL | J3KYS6 | 0.0 | J3KYS6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G21320.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-66 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 102711743 |