PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf38401g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 543aa    MW: 59733.3 Da    PI: 8.3428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf38401g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.2e-0687109123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C++C+k F+r  nL+ H r H
  Niben101Scf38401g00004.1  87 FFCEICNKGFKRDQNLQLHRRGH 109
                               67*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-686109No hitNo description
Gene3DG3DSA:3.30.160.602.6E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121719.1E-687109IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.74187109IPR007087Zinc finger, C2H2
SMARTSM003550.02187109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM0035593129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-6159184No hitNo description
SMARTSM00355160164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MMNIQQKHQH VHIVEENMSN LTSASGEASL SSSNNMNDTT TGAIFIPHNQ NPPQQQIKKK  60
RNQAGNPDPE AEVIVLSPKT LLATNRFFCE ICNKGFKRDQ NLQLHRRGHN LPWKLKQRTN  120
KEVIRKKVYV CPEPSCVHHD SSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDCK  180
AHSKTCGTRE YRCECGTLFS RCDSFITHRA FCDTLAVESA RSAITEGNPM ISFPSQAAGS  240
SSTSHMNQIQ FQTPQYFNNS HEFPAAAAFS MKKEQPNYDF NHLRHNSEIP QWLMTCQPFV  300
GAGPGPPSSV PAEFSSSVFQ ATRLNQEYTQ SHQDLTSADV HENSNPNFGA TPYHSTGEAA  360
VSPHISATAL LQKAAELSAT RSNKANAVSA SSPAHNTGPS AILMRQLPHQ THVSVTTDSV  420
AAAGNKQTDQ FGLNLSSRNS YGNKVAAATA PSFSFTNATG FEGSTFEDAF GGFGTLNSKK  480
DNDFNGTKFS ETTSGINEDI MTKDFLGLRP LSHSDIFNIA GLVNTTSSEN EDPLQNHNKT  540
WQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-30160221364Zinc finger protein JACKDAW
5b3h_F4e-30160221364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113126KLKQRTNKEVIRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238130.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
TrEMBLA0A1J6KS430.0A0A1J6KS43_NICAT; Protein indeterminate-domain 11
STRINGXP_009603433.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-103indeterminate(ID)-domain 11