PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf26981g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 366aa    MW: 40757.4 Da    PI: 6.7939
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf26981g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.2e-3389145259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               dDgynWrKYGqK+vkgse++rsYY+Ct+++Cpv+kkvers  d++v+ei+Y+g+Hnh+
  Niben101Scf26981g00007.1  89 DDGYNWRKYGQKQVKGSEYSRSYYKCTHSNCPVRKKVERSL-DGQVTEIIYKGQHNHQ 145
                               8****************************************.***************8 PP
2WRKY551.6e-172733102259
                               EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               rsYY+Cts+gC+ +k+ver+a+dp++v++tYeg+Hnh+
  Niben101Scf26981g00007.1 273 RSYYKCTSQGCNLRKHVERAATDPTAVVTTYEGKHNHD 310
                               9************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.44583147IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-2983147IPR003657WRKY domain
SuperFamilySSF1182907.72E-2686147IPR003657WRKY domain
SMARTSM007743.4E-3688146IPR003657WRKY domain
PfamPF031061.8E-2589145IPR003657WRKY domain
SuperFamilySSF1182901.03E-14260312IPR003657WRKY domain
SMARTSM007745.0E-13268311IPR003657WRKY domain
PfamPF031065.3E-12273310IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-16273312IPR003657WRKY domain
PROSITE profilePS5081122.079273312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSLQQVLAQF TTQAAQAQSQ MHIRPDYPSS STAAATSLSQ FQSLASNAAA NQQIPPPALN  60
PNIVKESSDV SLSDQRSEPA SFAVDKPADD GYNWRKYGQK QVKGSEYSRS YYKCTHSNCP  120
VRKKVERSLD GQVTEIIYKG QHNHQPPQSS KRSKESGNPN GNYNLQGSYE PSTEGLAGNF  180
NKPKEGETSY SLRMKDHESS QATHDQISGS SDSEEVGDTE TRVDGRDIDE RESKWRAVEI  240
QTSEAACSHR TVTEPRIIVQ TTSDVDLLDD GYRSYYKCTS QGCNLRKHVE RAATDPTAVV  300
TTYEGKHNHD VPAARNSSHN TTNNSMSQLR PHNSVVDKPA PMRRTDFQNN EQQPIALLRF  360
KEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2489313878Probable WRKY transcription factor 4
2lex_A2e-2489313878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453937.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-104WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1S3YPI60.0A0A1S3YPI6_TOBAC; probable WRKY transcription factor 4
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-100WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]