PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf25777g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 205aa MW: 23134.4 Da PI: 4.3822 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.5 | 5.3e-09 | 43 | 84 | 4 | 45 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 ++f++eq++ Le++Fe++ ++ +++ +LA++lgL+ rq + Niben101Scf25777g00001.1 43 TRRFSDEQIKSLETMFENETKLEPRKKLQLARELGLQPRQLQ 84 469************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.17E-8 | 21 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-10 | 27 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.616 | 37 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-6 | 43 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.61E-6 | 44 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MFDVGEFSCT SSAAALNSAE CFSSSSFSSL PSSKKKKVNN KNTRRFSDEQ IKSLETMFEN 60 ETKLEPRKKL QLARELGLQP RQLQKLNDLM QKSEKEGGQY CSIGVDQESY NRHDNTIKSK 120 EMDGKPSLSF DLSEHGVNGV ISDDDSSIKA DYFGLDEESD HLLKMVEAGD SSLTSPENWG 180 TLEDDGLLDQ QPNSCNYDQW WDFWS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019226444.1 | 1e-116 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A314KRV9 | 1e-115 | A0A314KRV9_NICAT; Homeobox-leucine zipper protein athb-7 | ||||
STRING | XP_009792428.1 | 1e-111 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-32 | homeobox 7 |