PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf24679g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 663aa    MW: 73801.9 Da    PI: 6.4785
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf24679g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.86e-29198251155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Niben101Scf24679g00016.1 198 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 251
                               79*******************.********************************8 PP
2Response_reg82.61.2e-27181261109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl+vdD+p+ +++l+++l++ +y +v+ +  +e al ll+ek+  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a +++
  Niben101Scf24679g00016.1  18 VLVVDDDPTCLRILEKMLRNCHY-QVTKCNRAEVALSLLREKKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSK 100
                               89*********************.***************999999**********************6654.8************ PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               + + + +  Ga d+l Kp+ +e+l +
  Niben101Scf24679g00016.1 101 DVVMKGVTHGAYDYLIKPVRIEALKN 126
                               **********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.2E-1811654IPR017053Response regulator B-type, plant
SuperFamilySSF521725.12E-3615139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-4215139No hitNo description
SMARTSM004482.7E-3116128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.80617132IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2418126IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.09E-2819131No hitNo description
PROSITE profilePS5129411.674195254IPR017930Myb domain
SuperFamilySSF466891.97E-20195255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-30197256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25198251IPR006447Myb domain, plants
PfamPF002496.7E-9200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MSVPSSTVSD QFPVGLRVLV VDDDPTCLRI LEKMLRNCHY QVTKCNRAEV ALSLLREKKN  60
GFDIVISDVH MPDMDGFKLL EHIGLEMDLP VIMMSADDSK DVVMKGVTHG AYDYLIKPVR  120
IEALKNIWQH VVRKKKHEWK DNNYDQSGSL EEGDRQQKLP EDADYSSSAN EGNWRNSKKR  180
KEEEEEAEER DDTSTLKKPR VVWSVELHQQ FVQAVHQLGI DKAVPKKILE LMNVPGLTRE  240
NVASHLQKYR LYLRRLSGVS QHQSSLNNSF MGRPDTTFGT ISPLNGLDLQ AIAAAGQIPA  300
QSLATLQAAA LGRSAATKSA ISMPLVDERN LFSFENSKLR FPEGQQQLNN SNKQIDLLHV  360
IPTTMEPKQL ANLHHPSQSF IGMKTQVNSM AQHNNSLLMR ISQSQPRAQM LNGANNSHQV  420
SRLPLSMQQP LSPEGIPGTV PTQSGIVDNA RGSVYNPVSQ ASSMVDFSLN QSKELQSYDF  480
SLGSNNSGMS TLTNRGMLQE EINSDIKGSR GFPSNYDIFN ELHQQKSQNW GLQNVGSTFD  540
ASHHPSIQGT QGVSSQLLLQ QEISSTHHSG QNRNARIIKP MYSNADESGH VNPMSGPQLN  600
SLGGSMLAVK AERFSDLDYH STIYHEQFGE EDLMSAFLKQ QGNVGPVETE FGFDGYTLDN  660
LPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20197257464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253345.10.0PREDICTED: two-component response regulator ARR2-like
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A1J6I2090.0A0A1J6I209_NICAT; Two-component response regulator
STRINGXP_009591694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-173response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]