PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf17802g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 301aa    MW: 35082.4 Da    PI: 6.5446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf17802g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009161185123
                               EEETTTTEEESSHHHHHHHHHH..T CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                               + C+ C+k ++  ++++ H+++  H
  Niben101Scf17802g02002.1 161 FFCELCNKQYKLAMEFEAHLSSydH 185
                               67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.1E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.73366111IPR000467G-patch domain
PfamPF015853.1E-1567107IPR000467G-patch domain
PfamPF121715.0E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDDRWFNGRP ELRMRDKRQQ EMEQADEASV LEDLAEDFRL PINHRPTENI DLENVEQASL  60
ETQLPSSNIG FRLLQKMGWK GKGLGKNEQG ITEPIKSGMR DPKLGIGKQE EDDYFTAEEN  120
IQRRKLDIER EETEELAKKR EVLAEREHKI ETEVKEIRKV FFCELCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKEMREMHGS SRDDRQKREQ QRQEREMAKF AQMAANKKQE EQQTPEEVGN  240
IPAPSMVRTA TALADQYQRK TLKFGFSSKG GSSKVTTLVN KAAKKPKVTV ASVFSNESDE  300
E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757219.10.0PREDICTED: G patch domain-containing protein 8
TrEMBLA0A1U7V4R00.0A0A1U7V4R0_NICSY; G patch domain-containing protein 8
STRINGXP_009757219.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86041415