PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf14361g01005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 355aa MW: 39746.5 Da PI: 7.9311

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf14361g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46.7	7.2e-15	184	223	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rF++ave LGG+e Ltl+hvkSHLQ+YR+ Niben101Scf14361g01005.1 184 PRMRWTSTLHARFIHAVELLGGHE--------------NLTLAHVKSHLQMYRT 223 9*******************98..............7************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.6E-8	181	223	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-13	182	223	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-10	184	223	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MELFPAQPDL SLQISSPNNK PSSSSSWKRS TSNSTNEDQE MDLGFWKRAL ESRNSSNNNN 60 NNINNSSCFE LSLSSNVNPK PNSSQYFHHL QNSNTNFIHS LHHQVLNPIR GVPVYNQNPH 120 FPYDNTNTTT TLPIPSSVSS FNYNHTISSS NSHSHFQSHH YHQNGLIRSR FMSRFPAKRS 180 MRAPRMRWTS TLHARFIHAV ELLGGHENLT LAHVKSHLQM YRTVKTTDKA AAGAASSGQS 240 EVFDNGSSGD NDSEELVLDI QNSGKSELSI QHAGRQEKDN YRGLWSNSSR ESWQLHGNKQ 300 GDYPGNLPSQ EKDNMEAKCL SYEGISTEVS SSTITEASPK KPNLEFTLGI MPNIS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MELFPAQPDL SLQISSPNNK PSSSSSWKRS TSNSTNEDQE MDLGFWKRAL ESRNSSNNNN  60
NNINNSSCFE LSLSSNVNPK PNSSQYFHHL QNSNTNFIHS LHHQVLNPIR GVPVYNQNPH  120
FPYDNTNTTT TLPIPSSVSS FNYNHTISSS NSHSHFQSHH YHQNGLIRSR FMSRFPAKRS  180
MRAPRMRWTS TLHARFIHAV ELLGGHENLT LAHVKSHLQM YRTVKTTDKA AAGAASSGQS  240
EVFDNGSSGD NDSEELVLDI QNSGKSELSI QHAGRQEKDN YRGLWSNSSR ESWQLHGNKQ  300
GDYPGNLPSQ EKDNMEAKCL SYEGISTEVS SSTITEASPK KPNLEFTLGI MPNIS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800761.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	3e-74	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A1U7YFM9	0.0	A0A1U7YFM9_NICSY; probable transcription factor KAN2 isoform X2
STRING	XP_009800760.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-48	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]