PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13098g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 612aa    MW: 66581 Da    PI: 7.918
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13098g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR452.1e-14132171242
                       TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                               ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ e+
  Niben101Scf13098g00012.1 132 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCNNCHNNVEN 171
                               89**************************.********9875 PP
2TCR50.83.2e-16216255140
                       TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                               k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Niben101Scf13098g00012.1 216 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 255
                               589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-16131171IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.776132256IPR005172CRC domain
PfamPF036382.3E-11133168IPR005172CRC domain
SMARTSM011148.4E-20216257IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12219254IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MENSEGGDSF PPNKAQSEAA VSASAATTGQ PQVVVDFPAK KLARQLDFTV FGGSSGQSPV  60
TAMPEQTKQI QPLVKSIQLQ RPQTQQHMVL MPTKQTAVPT THPSIRPPLK PDSPRARPRQ  120
SVSEVKDGTP KKQKQCNCKH SRCLKLYCEC FASGIYCDGC NCNNCHNNVE NEPARREAVE  180
ATLERNPHAF RPKIASSPHG ARDNKEEIGD VLVLAKHNKG CHCKKSGCLK KYCECFQANI  240
LCSENCKCMD CKNFEGSEER QALFHGDHAN NMAYLQQAAN AAITGAIGSS GYGLSPVNKK  300
RKGQELFFGS SVKEPVHRHG QSQQGNHIKA SVLPSLSSVP GPCVGNAATV GPSKFTYRSL  360
LADLIQPQDL KELCSVLVLH SGEAAKMLAD EKDASMKQTE WQREASLASS TQERVQNQKD  420
SGTEKDMLDC CSSGDRGEKV SMEESSLDGA DVSKRPMSPG TLALMCDESH TMFAAAVASP  480
NDLATLSCNT SSQLPHGQGM TETYAEQERI VLMKFRDCLN RLADLGQLKE RKCSSMIRGA  540
EPIDQKDVIG NGFTTTETRN QHDSLNNGVA KSSLPQPRTT QFFSAVVTTA NNNNTFPKVH  600
RPDENGDVKL QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-311242652132Protein lin-54 homolog
5fd3_B1e-311242652132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803574.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7YWM20.0A0A1U7YWM2_NICSY; protein tesmin/TSO1-like CXC 5
STRINGXP_009803574.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-175Tesmin/TSO1-like CXC domain-containing protein