PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11823g00016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 282aa MW: 30830.2 Da PI: 7.3298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11823g00016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0017	109	131	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H Niben101Scf11823g00016.1 109 FQCKTCNRCFSSFQALGGHRASH 131 89**********99999998887 PP
2	zf-C2H2	13.4	0.00022	190	212	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Niben101Scf11823g00016.1 190 HECSICGAEFTSGQALGGHMRRH 212 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	5.8E-10	108	133	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.13E-9	108	131	No hit	No description
PROSITE profile	PS50157	10.554	109	136	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	109	131	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	111	131	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.13E-9	185	212	No hit	No description
Pfam	PF13912	9.3E-13	189	213	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.723	190	212	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	190	212	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	192	212	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEFVQMQENV DHHMNMVIKR RRTKRPRPPS PLALTIATSS CSTVEGASGG GGSGGELDGH 60 MANSSSLSNC GIDQFAKNSE EEEEDMANCL ILLAQGHNQK SQSSSSDVFQ CKTCNRCFSS 120 FQALGGHRAS HKKPKSTTLE EIKNSKPIEQ VATCLKLNED HVTTLSLQIP SSNNNNNNNN 180 SNGKNKTRVH ECSICGAEFT SGQALGGHMR RHRPLPNSIT IAASSTSNEE AHDQTKNTRN 240 FLSLDLNLPA KEDDHREITK FSFGSKEQVI VFSASPLVDC HY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	27	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782985.1	1e-169	PREDICTED: zinc finger protein ZAT5-like
Refseq	XP_016507626.1	1e-169	PREDICTED: zinc finger protein ZAT5-like
Swissprot	Q681X4	5e-49	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A1S4D2L9	1e-167	A0A1S4D2L9_TOBAC; zinc finger protein ZAT5-like
TrEMBL	A0A1U7X973	1e-167	A0A1U7X973_NICSY; zinc finger protein ZAT5-like
STRING	XP_009782985.1	1e-168	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-49	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]