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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf11790g01009.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
MYB |
| Protein Properties |
Length: 238aa MW: 27666.9 Da PI: 6.9491 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf11790g01009.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 46.4 | 8.9e-15 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed +lv +vk++G ++W+ a+ g++R++k+c++rw +yl
Niben101Scf11790g01009.1 9 KGPWTEQEDVQLVFYVKMFGDRRWDFLAKVSGLKRSGKSCRLRWVNYL 56
79********************************************97 PP
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| 2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E+ l ++++ ++G++ W++Ia +++ gRt++++k++w++++
Niben101Scf11790g01009.1 62 RGKMTPQEEHLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 107
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MVQEEIIRKG PWTEQEDVQL VFYVKMFGDR RWDFLAKVSG LKRSGKSCRL RWVNYLNPAL 60
KRGKMTPQEE HLVLQLHSKY GNRWSKIAGK LPGRTDNEIK NYWRTHMRRQ AQDRRNKNKA 120
SISPSSSFSN SSSNSSANSP TVDSMPINEQ NQRNSNDGLQ LLQLAAGENE VYDHESGEKN 180
MMVYSIDDIW KDVESSEDTD QTMNKLPVMA SPLWDYCPDS LWMTDYYFDN QDISFFTG
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 4e-29 | 9 | 111 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-28 | 9 | 111 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-28 | 9 | 111 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 9e-29 | 7 | 111 | 25 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 5e-29 | 9 | 111 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 5e-29 | 9 | 111 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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