PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11410g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 96aa    MW: 11320.9 Da    PI: 10.9285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11410g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.91.3e-1239417106
                       NAM  17 eyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                               ++Lk+ ++g++++ e  +++++iy    Pw++  +  ++eek  yfF++ +k++++ +r +r+ ++g+Wka+    ++++ kg++
  Niben101Scf11410g00003.1   3 NFLKRFLKGETFPSEYPFQHAHIYGDrPPWEIFgADSSSEEKVRYFFTQLKKHKSEHTRVRRTCTNGTWKAQTGIVPIKNGKGTV 87 
                               89*********999778******986478***745656666777******************9999*****9999*****99999 PP

                       NAM 100 vglkktL 106
                               +g ++ +
  Niben101Scf11410g00003.1  88 IGFRRNF 94 
                               9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.303196IPR003441NAC domain
SuperFamilySSF1019412.62E-11394IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MINFLKRFLK GETFPSEYPF QHAHIYGDRP PWEIFGADSS SEEKVRYFFT QLKKHKSEHT  60
RVRRTCTNGT WKAQTGIVPI KNGKGTVIGF RRNFNR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264488.11e-58PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A314L5J43e-57A0A314L5J4_NICAT; Nac domain-containing protein 78
STRINGXP_009617292.11e-55(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386