PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11138g01008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 397aa MW: 44129.4 Da PI: 9.286 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.9 | 2.5e-13 | 83 | 139 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g Niben101Scf11138g01008.1 83 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 139 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-9 | 83 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-15 | 83 | 148 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-19 | 84 | 153 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-12 | 84 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 84 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-5 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-5 | 129 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MVKTKNQRTA LLMASPSSEP TAKPEGSSGN DVGGGETSEA MGSIGTDQLL LYRGLKKAKK 60 ERGCTAKERI SKMPPCTAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQGAY 120 DDEEAAARAY DLAALKYWGP GTLINFPVTD YTRDLEEMQN VSREDYLASL RRKSGGFSRG 180 ISKYRPLSRK IDLSSYIKWW GGNKARQTDS HLKTSEETKV GCPEDIDNEL RASELSIQQT 240 EPYEMPCLGV CQERKNHKSS ALSAMSILSQ SAAYKSLQEK VAKKKEKVEN DENENKSTIN 300 RVDHGKTIEK SSPDSGSERL GAAFLNPGGS SISRNLHPLT PLLSAPLLTN YNNNVDPLTD 360 PVLWTSLVPI FHTGSSRTVE VHKSEATSDY TLFQQED |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783849.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-128 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A1U7XA86 | 0.0 | A0A1U7XA86_NICSY; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
STRING | XP_009783849.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10734 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-106 | AP2 family protein |