PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10919g01034.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 512aa    MW: 55883.1 Da    PI: 8.4346
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10919g01034.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.41.2e-11428487564
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                               kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  l+  +a l+s+++
  Niben101Scf10919g01034.1 428 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQNH 487
                               9******************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-19424488IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795426489IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-11428485No hitNo description
PfamPF001703.5E-10428487IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.64E-11428479No hitNo description
CDDcd147033.60E-24429480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MGGDNEEGNS DMVQRLQSSF GTSSSSLPKQ HQSLLSMDQL DIPQLTNSSQ FRGQMRQFSP  60
NFSVENSTSK RVGIPPSHPQ MPPISPYSQI PVTRIVNQQM GMQSFTSPGP SHSRSLSQPS  120
FFSLDSLPPL SPSPYRESSS TSMSDPISAD VSMGDQDGNS HSLLPPSPFM RCNSSRAGES  180
LPPRKAHRRS NSDIPFGFSA MMQSSPPLVP LRSPGSLERS VPSREKPIQL VKREAMWDKG  240
NDSNAEGMGE RKSEGEVVDD LFSAYMNLDN IDALNSSGTD NKLGNENRED LDSRASGTKT  300
NGGDSSDNEA TSSVNDSGSS MQRLGISSSV EKKEGIKRSA VGDIAPTTRH YRSVSMDSFM  360
GKLNFVDDSP KLPPSPGPRP GQLSPTSSLD ANSNSFSLEI GNGEFSGAEL KKIMANEKLA  420
EIALADPKRA KRILANRQSA ARSKERKMRY IAELEHKVQT LQTEATTLSA QLTLLQRDSA  480
GLTSQNHELK FRLQAMEQQA QLRDVLHYKK TR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480185.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_016480186.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_016480187.10.0PREDICTED: probable transcription factor PosF21
TrEMBLA0A1S4ATW70.0A0A1S4ATW7_TOBAC; probable transcription factor PosF21
STRINGXP_009804619.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-121bZIP family protein