PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10767g03010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | RAV | ||||||||
Protein Properties | Length: 418aa MW: 47972.8 Da PI: 8.3256 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.9 | 1.9e-11 | 59 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAaka+ a+++++g Niben101Scf10767g03010.1 59 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYYIAAQRFRG 107 689***9788.8*********3.....5**********99************998 PP | |||||||
2 | B3 | 100.5 | 9.8e-32 | 215 | 312 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae++ + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F Niben101Scf10767g03010.1 215 FEKVVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF 298 99*************************964.45689************************************************* PP EE-SSSEE..EEEE CS B3 83 kldgrsefelvvkv 96 +++ +++l++ + Niben101Scf10767g03010.1 299 GRSNGVDKQLYIDW 312 *8766666677665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-16 | 59 | 115 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.10E-22 | 59 | 114 | No hit | No description |
Pfam | PF00847 | 1.4E-5 | 59 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.571 | 60 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-24 | 60 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-17 | 60 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-42 | 207 | 319 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-32 | 213 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-28 | 214 | 298 | No hit | No description |
Pfam | PF02362 | 3.3E-29 | 215 | 313 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.974 | 215 | 314 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 215 | 316 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MEGSCCIEQE STTSDSPSFA PTLIPSRLSR MGSGTSSVII DAELNCSIEA ESNKKLPSSR 60 FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYYI AAQRFRGKDA VTNFKPLCDS 120 EKEEIEISFL NSRSKAEIVD MLRKHTYNDE LEHSKKVCTF EKNDKKECEN ALVTSFDVEN 180 MSKARELMFE KVECENALVT SFDEENMSKA RELMFEKVVT PSDVGKLNRL VIPKQHAERY 240 FPLENNSKGM LLNLEDMNGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL KAGDIVSFGR 300 SNGVDKQLYI DWKARTSSTI TPILDKIQDK VQPVKMVRLF GVNICKVEDV NNIVVENNMS 360 SCSGGKRMRE MELLAFECRK KQRMFQLLTF NCTLVLEKLK IGSKGELNYG ENRDEKRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-55 | 212 | 320 | 11 | 122 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789826.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q9ZWM9 | 1e-132 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A1U7XJN3 | 0.0 | A0A1U7XJN3_NICSY; AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
STRING | XP_009789826.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-133 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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