PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf10559g01032.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 609aa MW: 69099.6 Da PI: 5.9891

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf10559g01032.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	32.8	1.4e-10	426	465	11	46
RWP-RK 11 skyFslpikdAAkeLg....vclTvLKriCRqyGIkRWPh 46 + s ++ A+ L+ v+ ++LKriCR yGI RWP Niben101Scf10559g01032.1 426 QLELSTRQEQGANALNkrknVGKSTLKRICRLYGITRWPP 465 55556666788888888888*******************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	9.545	407	498	IPR003035	RWP-RK domain
Pfam	PF02042	8.9E-8	430	466	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-14	524	606	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.5E-15	525	605	No hit	No description
PROSITE profile	PS51745	20.29	526	608	IPR000270	PB1 domain
SMART	SM00666	2.8E-15	526	608	IPR000270	PB1 domain
Pfam	PF00564	1.7E-14	529	607	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MESVFSEHAW SRQPNGLWVF WSERDDAEQL LNHFSFTADV VTKRMAIKER VKIALQHVEK 60 LSCNYLIQFW ASIVIDGQIF LTTSDQPFGL TRLEYGLCSY RKKCMSHAIP VELKNSTQCE 120 NDLGPPGRVF KHRLPELCTD VKNYSQQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL 180 ELVTSHQTNE WMFGNSVLPI FKMLQVVDLK SPDSYCPLNL KTVSRQVLDD QQCTLGGLYK 240 AIEVDVTQLS IIEYPLVTCA REAGLTGCFA ICLSTPGNDD NVYILEFFLP PNELLHRNLQ 300 DFLKLFLDTV QQQLHRFKVA VGHDFGEKLP VEVIKISSDD ELDSFDICQT TKELNNVEPL 360 PNGGELMLLD TPNQQSFSSE TNQQLSLDIN EINAERDSIA VSEEQCNSAG SSTSTKTSQN 420 KERKLQLELS TRQEQGANAL NKRKNVGKST LKRICRLYGI TRWPPKNKEK KRKCSHSRKM 480 KSILPAEEDV NARTKFQQSS DSPNNEDTIN GVKVGAHVTE IRDGTAVITK VKYGDRMLKL 540 KLPLSSKMKD LEEEVAKRVK SSIESFDFTY VDKDGDTILI KCDEDLTECF LHCRSSESAT 600 VKMSITPKS

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MESVFSEHAW SRQPNGLWVF WSERDDAEQL LNHFSFTADV VTKRMAIKER VKIALQHVEK  60
LSCNYLIQFW ASIVIDGQIF LTTSDQPFGL TRLEYGLCSY RKKCMSHAIP VELKNSTQCE  120
NDLGPPGRVF KHRLPELCTD VKNYSQQEFP LRDDAVAWSI QWCYTVPVFD PSRDTFVGVL  180
ELVTSHQTNE WMFGNSVLPI FKMLQVVDLK SPDSYCPLNL KTVSRQVLDD QQCTLGGLYK  240
AIEVDVTQLS IIEYPLVTCA REAGLTGCFA ICLSTPGNDD NVYILEFFLP PNELLHRNLQ  300
DFLKLFLDTV QQQLHRFKVA VGHDFGEKLP VEVIKISSDD ELDSFDICQT TKELNNVEPL  360
PNGGELMLLD TPNQQSFSSE TNQQLSLDIN EINAERDSIA VSEEQCNSAG SSTSTKTSQN  420
KERKLQLELS TRQEQGANAL NKRKNVGKST LKRICRLYGI TRWPPKNKEK KRKCSHSRKM  480
KSILPAEEDV NARTKFQQSS DSPNNEDTIN GVKVGAHVTE IRDGTAVITK VKYGDRMLKL  540
KLPLSSKMKD LEEEVAKRVK SSIESFDFTY VDKDGDTILI KCDEDLTECF LHCRSSESAT  600
VKMSITPKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	464	472	PKNKEKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018626474.1	0.0	PREDICTED: protein NLP7-like isoform X1
TrEMBL	A0A1S4BC54	0.0	A0A1S4BC54_TOBAC; protein NLP7-like isoform X1
STRING	XP_009601280.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13034	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	5e-21	NIN like protein 7