PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09704g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 272aa    MW: 29110.2 Da    PI: 6.965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09704g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17e-212777256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++aa+++++g+
  Niben101Scf09704g02001.1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRGA 77
                              6********.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.41E-202784No hitNo description
PROSITE profilePS5103224.0922784IPR001471AP2/ERF domain
PfamPF008473.3E-142776IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-222785IPR016177DNA-binding domain
SMARTSM003805.7E-392790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-322784IPR001471AP2/ERF domain
PRINTSPR003673.2E-112839IPR001471AP2/ERF domain
PRINTSPR003673.2E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAPKQLGGAV AVTAAVGEVN GISKEVHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAAKAYDAA AREFRGAKAK TNFPPEEEEN LKIAQNNLGE EENLKIAQNN LGVKMITNVN  120
DNNNRSPSQS STVESSSRDG LSPAVMVDSS PLDLSLGVKF PFQNNQFRTS PIPGGFSGCG  180
FTGATPAMNH HLYYLEALAR AGVINLEKQQ QRQTVDFLGG NGGHGGSSGG SGSGTQSESD  240
SSSVIEFMRN DVKPPTRTSL NLDLNFPPPE NA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-222784260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311661.11e-137ethylene-responsive transcription factor 9-like
RefseqXP_009760120.11e-137PREDICTED: ethylene-responsive transcription factor 9-like
RefseqXP_016435613.11e-137PREDICTED: ethylene-responsive transcription factor 9-like isoform X1
TrEMBLA0A1U7VE741e-135A0A1U7VE74_NICSY; ethylene-responsive transcription factor 9-like
TrEMBLR4WAJ91e-135R4WAJ9_TOBAC; Ethylene response factor #193
STRINGXP_009760120.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-26erf domain protein 9