PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf09628g02007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 366aa MW: 41384.1 Da PI: 9.8238

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf09628g02007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	8.8e-32	214	267	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Niben101Scf09628g02007.1 214 PRMRWTSSLHGRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 267 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-15	210	267	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	212	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	214	267	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-6	215	266	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSTNWKRSS TTEDEMDLMF WRRALESRNS NTSSLAKPHN 60 NNNTSLFELS LSNPKPTPEF NSGPFHHIQN THTNFIRSLQ QNHLLQQQNQ GLNSELSFLR 120 PIRGIPVYHQ NPPPPPASHY PIFGQQTFDN TNTAATLPTR SSGCCINNNN YNKTMSSSSS 180 RIPFQTSQQY HHQAGVMRSR FLSRFPAKRT MRAPRMRWTS SLHGRFVHAV ELLGGHERAT 240 PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRVAVPASS GQSEVFDNGS SGDTSEDLIP 300 DLENSRKSDL SDQQARNNNM HLQHKDYHAG LWSNSSRESW QLHGKLGDYP GNITSLEVLY 360 TISLKI

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSTNWKRSS TTEDEMDLMF WRRALESRNS NTSSLAKPHN  60
NNNTSLFELS LSNPKPTPEF NSGPFHHIQN THTNFIRSLQ QNHLLQQQNQ GLNSELSFLR  120
PIRGIPVYHQ NPPPPPASHY PIFGQQTFDN TNTAATLPTR SSGCCINNNN YNKTMSSSSS  180
RIPFQTSQQY HHQAGVMRSR FLSRFPAKRT MRAPRMRWTS SLHGRFVHAV ELLGGHERAT  240
PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRVAVPASS GQSEVFDNGS SGDTSEDLIP  300
DLENSRKSDL SDQQARNNNM HLQHKDYHAG LWSNSSRESW QLHGKLGDYP GNITSLEVLY  360
TISLKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615773.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X2
Refseq	XP_016459615.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	5e-78	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A1S3Z561	0.0	A0A1S3Z561_TOBAC; probable transcription factor KAN2 isoform X2
STRING	XP_009798333.1	0.0	(Nicotiana sylvestris)
STRING	XP_009615772.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-78	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]