PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08448g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 275aa MW: 30994 Da PI: 6.681

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08448g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.6	7.6e-27	93	179	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +r+ r gCka++ vkke++gkw+v kl++eHn Niben101Scf08448g00001.1 93 YYSTYATHLGFVMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQNQ--NGQRKCRAIREGCKAMIIVKKEQSGKWVVVKLVKEHN 175 8***************************************9988..778888889************************ PP FAR1 87 Hela 90 H+la Niben101Scf08448g00001.1 176 HPLA 179 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-25	93	179	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAVDENNNAT EDAEMVESSS GKELTTNGVE AEGRLNMKPY VVDENNTTAD DGEIVESSSG 60 KELTRNGVAA EGRPNLEPYV GMEFESEEAA KAYYSTYATH LGFVMRVDAF RRSMRNGELV 120 WRRLVCNKEG FSKSRQNQNG QRKCRAIREG CKAMIIVKKE QSGKWVVVKL VKEHNHPLAV 180 KPANTRIGSI LCQTPDDKDV KIRELTAELQ KERKRSAVLQ EQLDMVLKDM EDHSDQLSKN 240 INDIVKRLLS VQKLKLAGEA QEWKNEKACQ DSPHP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016450608.1	1e-175	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1S3YF31	1e-174	A0A1S3YF31_TOBAC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_009620544.1	1e-174	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	9e-80	FAR1 family protein