PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08341g10005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 322aa MW: 36136.5 Da PI: 5.5476 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.2 | 3.4e-35 | 12 | 104 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 F+ k+y++++d++++ li w +++nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F Niben101Scf08341g10005.1 12 FVLKTYQMVNDPKIDGLIAWGKENNSFIVVEPLDFSQRILPIYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWF 87 9****************************************************************999.........******** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 +g+++ll++i r+k++ Niben101Scf08341g10005.1 88 LRGQTHLLKNIVRRKHS 104 *************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.2E-48 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-33 | 9 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.5E-36 | 10 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.6E-17 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.6E-29 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-17 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 51 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.6E-17 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEANNSNIIA PFVLKTYQMV NDPKIDGLIA WGKENNSFIV VEPLDFSQRI LPIYFKHNNF 60 SSFVRQLNTY GFRKVDPDKW EFANEWFLRG QTHLLKNIVR RKHSRNSYSL KQDESEDEEI 120 YTEIARLKQE QKALEQEVEN MTKRLEATEK RPQQMMAFLC KVVDDPEILP RILLEKERSK 180 RVSLNNSEKK RRIMISNNST SCSSVKSEEE VGDPLVGAIS SFRSPDANFD KDTLCQSSPS 240 SETPATTWIG GRPMITYEPY RSFPAMSSSL SSGSSDSGGF TKAPSSEAFS GYDYSGGGGG 300 GSVAAEEVSP PPYPFSLLGG GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-23 | 3 | 101 | 21 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-23 | 3 | 101 | 21 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-23 | 3 | 101 | 21 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770587.1 | 0.0 | PREDICTED: heat stress transcription factor C-1 | ||||
Refseq | XP_016479969.1 | 0.0 | PREDICTED: heat stress transcription factor C-1-like | ||||
Swissprot | Q9LV52 | 7e-90 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A1S4ATG3 | 0.0 | A0A1S4ATG3_TOBAC; heat stress transcription factor C-1-like | ||||
TrEMBL | A0A1U7VRR7 | 0.0 | A0A1U7VRR7_NICSY; heat stress transcription factor C-1 | ||||
STRING | XP_009770587.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6832 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 8e-91 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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