PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07205g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 163aa    MW: 17524.5 Da    PI: 5.9769
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07205g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.52e-5327119294
                     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                               reqdr+lPian++rimkk+lPan+ki+kd+k+tvqecvsefisf+tseasdkcq+ekrktingddll alatlGfedy++plkvy
  Niben101Scf07205g00006.1  27 REQDRYLPIANIGRIMKKALPANGKIAKDSKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLSALATLGFEDYIQPLKVY 111
                               89*********************************************************************************** PP

                     NF-YB  87 lkkyrele 94 
                               l++yre +
  Niben101Scf07205g00006.1 112 LARYREGD 119
                               *****965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-5023122IPR009072Histone-fold
SuperFamilySSF471131.71E-3729123IPR009072Histone-fold
PfamPF008082.8E-273296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-196078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-197997No hitNo description
PRINTSPR006153.0E-1998116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAEPASPGGG GGSHESGGER SPQSNLREQD RYLPIANIGR IMKKALPANG KIAKDSKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLLSALATLG FEDYIQPLKV YLARYREGDA  120
KGSARVGDAS VRKDIVGSQL GSNTQFVYEG SFAQGLDYGN SQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4626117192Transcription factor HapC (Eurofung)
4g92_B1e-4626117192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782060.11e-104PREDICTED: nuclear transcription factor Y subunit B-10-like
RefseqXP_016476361.11e-104PREDICTED: nuclear transcription factor Y subunit B-10-like
RefseqXP_019264327.11e-104PREDICTED: nuclear transcription factor Y subunit B-10-like
SwissprotQ8VYK48e-72NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1S4AI781e-102A0A1S4AI78_TOBAC; nuclear transcription factor Y subunit B-10-like
TrEMBLA0A1U7X6G31e-102A0A1U7X6G3_NICSY; nuclear transcription factor Y subunit B-10-like
TrEMBLA0A314L5Z41e-102A0A314L5Z4_NICAT; Nuclear transcription factor y subunit b-10
STRINGXP_009782060.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.17e-69nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]