PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06876g01043.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 486aa MW: 53441.6 Da PI: 4.5515

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06876g01043.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	112.1	3.6e-35	172	274	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkeps 79 klfqrlw++eDei lLqG++d+++++g + + d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++ Niben101Scf06876g01043.1 172 KLFQRLWTDEDEIELLQGFLDYTTQRGLnnssmpQHHYDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFV 256 579**********************97766544456******************************************* PP DUF573 80 fskehdqkifelskkiWg 97 f+++hd+ +fe+s+kiW Niben101Scf06876g01043.1 257 FKSAHDHATFEISRKIWT 274 ***************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.4E-33	174	273	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MASLDHHQRQ PVYNDENLDD DVDVDGDDDS TSSPSLAGEV TIAVSGVGVS TSDSLALYPD 60 LKRRRLDDFT IPVILPEKKP SATFDDSQRK LFQLYNDENL DDDVDVDGDD DSTSSPSLAG 120 EVTIAVSGVG VSTSDSLALY PDLKRRRLDD FTIPVILPEK KPSATFDDSQ RKLFQRLWTD 180 EDEIELLQGF LDYTTQRGLN NSSMPQHHYD TTAFYDQIKS KFQLDFNKNQ LVEKLRRLKK 240 KYRTVMSKMG SGKEFVFKSA HDHATFEISR KIWTNVGSAV RGGANGAAGA VVLYAPPEDD 300 GGLDDDDAHV NPNPYANDLI DHSPKFNLNS NPNGIDIKTP RPRKRSPAAS AEAVKVEQQP 360 YQPSGGSTTV PLAAAPVAEV AATATVAASM PSLIEETVRN CVSPIFKELL NSVANLNGRS 420 KGFGFEGMGM NPIPLGFGGG AMSLEMMGDE KWWKQQMLEL EVYSKRLELV QDQIKAQLEE 480 LRSMGS

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MASLDHHQRQ PVYNDENLDD DVDVDGDDDS TSSPSLAGEV TIAVSGVGVS TSDSLALYPD  60
LKRRRLDDFT IPVILPEKKP SATFDDSQRK LFQLYNDENL DDDVDVDGDD DSTSSPSLAG  120
EVTIAVSGVG VSTSDSLALY PDLKRRRLDD FTIPVILPEK KPSATFDDSQ RKLFQRLWTD  180
EDEIELLQGF LDYTTQRGLN NSSMPQHHYD TTAFYDQIKS KFQLDFNKNQ LVEKLRRLKK  240
KYRTVMSKMG SGKEFVFKSA HDHATFEISR KIWTNVGSAV RGGANGAAGA VVLYAPPEDD  300
GGLDDDDAHV NPNPYANDLI DHSPKFNLNS NPNGIDIKTP RPRKRSPAAS AEAVKVEQQP  360
YQPSGGSTTV PLAAAPVAEV AATATVAASM PSLIEETVRN CVSPIFKELL NSVANLNGRS  420
KGFGFEGMGM NPIPLGFGGG AMSLEMMGDE KWWKQQMLEL EVYSKRLELV QDQIKAQLEE  480
LRSMGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	147	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591277.1	0.0	PREDICTED: probable transcription factor At5g28040
Refseq	XP_016507116.1	0.0	PREDICTED: uncharacterized protein LOC107824825
TrEMBL	A0A1S4D151	0.0	A0A1S4D151_TOBAC; uncharacterized protein LOC107824825
STRING	XP_009591277.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-71	DNA-binding storekeeper protein-related transcriptional regulator