PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06867g05005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 369aa    MW: 41633 Da    PI: 5.8967
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06867g05005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.8e-32236291156
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                               k+r++W+peLH+rFv+a++qLGG+++AtPk i+e+m+v+gLt+++vkSHLQkYRl+
  Niben101Scf06867g05005.1 236 KQRRCWSPELHRRFVDALHQLGGPQVATPKLIREIMQVDGLTNDEVKSHLQKYRLH 291
                               79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-30233294IPR009057Homeodomain-like
PROSITE profilePS5129415.674233293IPR017930Myb domain
SuperFamilySSF466893.23E-17234294IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-26236291IPR006447Myb domain, plants
PfamPF002492.7E-8238289IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGSSSKELNL DLNCVYVPKI ISDVLTEVSA MDDISKKLTK LNHFVVYLEE ELKKIEAFKR  60
ELPLCMVLLK DAIERLKEEA LQYKGKDKRP MMEEFIPLKG NSDESGRVEI SNDISDKKNW  120
MSSAQLWSTP VHYESIDLGK QGQFLHLKSL INQSGVEGTD REKEYQLGIY KLKNERGEFM  180
AFEENSVGGV KDEKNDKAVK DLSVCMAVGV DVSVKRDNRS NGCSSNFLEE KSQQRKQRRC  240
WSPELHRRFV DALHQLGGPQ VATPKLIREI MQVDGLTNDE VKSHLQKYRL HVQRVPVSGS  300
SWSTMDEIGE SSKTNATQSG SPEGPLHFTG SGSAKGVSIN EGETMEEEDN KSESYTWNGQ  360
IQKTIEAHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-13236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-13236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-13236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13236289154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-13236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-13236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-13236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-13236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-13236289255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-13236289255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487914.10.0PREDICTED: uncharacterized protein LOC107807956
TrEMBLA0A1S4BGB30.0A0A1S4BGB3_TOBAC; uncharacterized protein LOC107807956
STRINGXP_009796235.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-55G2-like family protein