PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 156aa MW: 17585.7 Da PI: 9.4552

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06444g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.7	5.1e-17	20	69	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g Niben101Scf06444g02001.1 20 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 69 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.5E-36	20	83	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-20	20	78	IPR016177	DNA-binding domain
PROSITE profile	PS51032	21.904	20	77	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.1E-29	21	78	IPR001471	AP2/ERF domain
CDD	cd00018	3.42E-27	21	78	No hit	No description
PRINTS	PR00367	2.0E-11	21	32	IPR001471	AP2/ERF domain
Pfam	PF00847	1.5E-10	21	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-11	59	79	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MVSMMEGEKR KQRQHQQDKP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY SSPVAAARAY 60 DTAVFYLRGP TARLNFPECI VNDDRELHDL SAASIRKKAT EVGARVDALQ TAAALHNNSS 120 AGSTESNSNS HINPGRVTIK PDLNEYPSPE SCEEDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-15	17	77	2	63	ATERF1
3gcc_A	4e-15	17	77	2	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00595	DAP	Transfer from AT5G67190	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796242.1	1e-110	PREDICTED: ethylene-responsive transcription factor ERF010-like
Refseq	XP_016452686.1	1e-110	PREDICTED: ethylene-responsive transcription factor ERF010-like
Swissprot	Q9FH94	4e-54	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A1S3YKB5	1e-108	A0A1S3YKB5_TOBAC; ethylene-responsive transcription factor ERF010-like
TrEMBL	A0A1U7XW50	1e-108	A0A1U7XW50_NICSY; ethylene-responsive transcription factor ERF010-like
STRING	XP_009796242.1	1e-109	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA943	23	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67190.1	3e-53	DREB and EAR motif protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]