PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06343g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25978.6 Da PI: 5.9541 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C aCk+lrrkC+k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ ++ yeA+ar++dP+yG+v++i++lq Niben101Scf06343g00006.1 8 PCGACKFLRRKCVKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPVTDRGEAAVTISYEAQARLQDPIYGCVSHIFALQ 92 7*************************89********************************************************* PP DUF260 85 qqleqlkaelallkee 100 qq+ +l+a+la+lke+ Niben101Scf06343g00006.1 93 QQVVNLQAQLASLKEQ 108 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.186 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-37 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MTSSAGSPCG ACKFLRRKCV KGCVFAPYFC YEQGATHFSA IHKVFGASNV SKLLAHIPVT 60 DRGEAAVTIS YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKEQAA QNLQNGSNYT 120 NPNYEKFQDL QSWFHQSENS NTNMSQLDSS LTSNNIGSTP YYGSHENMTS NNYHMGNYAN 180 MVLPKENMSS FEEGSCSIDS YDMQTDHHNS QWTFQDDVDD LQSMAFRYLQ HS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 2 | 102 | 5 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 2 | 102 | 5 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771981.1 | 1e-168 | PREDICTED: LOB domain-containing protein 14-like | ||||
Refseq | XP_016506434.1 | 1e-168 | PREDICTED: LOB domain-containing protein 14-like | ||||
Swissprot | Q9M2J7 | 8e-66 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A1S4CZL5 | 1e-166 | A0A1S4CZL5_TOBAC; LOB domain-containing protein 14-like | ||||
TrEMBL | A0A1U7W453 | 1e-166 | A0A1U7W453_NICSY; LOB domain-containing protein 14-like | ||||
STRING | XP_009771981.1 | 1e-167 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8446 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-57 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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