PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06228g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 346aa    MW: 37344.1 Da    PI: 8.1579
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06228g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702229.94.4e-711212733153
                    DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqs 84 
                                g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++   +++++  +++ +++ +s
  Niben101Scf06228g01001.1 121 GGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQTQQlslRADSNIIPKRPRENPSS 205
                               5789****************************************************999998888788555555566666789** PP

                    DUF702  85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                               +l++t+l+  +s  e+  + +P+evss+avfrcv+vs++dd+e+++aYqtav+igGh+fkGiLydqG+e
  Niben101Scf06228g01001.1 206 SLACTRLPAISSGLEVGGH-FPAEVSSQAVFRCVKVSAIDDAEDQFAYQTAVNIGGHLFKGILYDQGPE 273
                               *********9999777765.***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-68123273IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-26125167IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.7E-28224272IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSGFFTLGGG GGGGGNKEQQ EQEQDQLATN SFLLFKNEEI YNKGFELWQQ YYQLHQQRAQ  60
TPQHQVQEMD FSFGVGPSNN RRIISGSSSS GNNNIVGDDN NHNYSNSFRV MRPTGGSSSS  120
GGGMNCQDCG NQAKKDCPHL RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLAALQQQ  180
QQTQQLSLRA DSNIIPKRPR ENPSSSLACT RLPAISSGLE VGGHFPAEVS SQAVFRCVKV  240
SAIDDAEDQF AYQTAVNIGG HLFKGILYDQ GPEGRYGGGG GGGESSSGSG AAQQALNFIT  300
GATTSTTTAA ATTHQQQHGT MFDPSVYPTP INAFMAGTQF FPPPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599252.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
TrEMBLA0A1S4BBZ40.0A0A1S4BBZ4_TOBAC; protein SHI RELATED SEQUENCE 1-like isoform X1
STRINGXP_009599252.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.16e-61Lateral root primordium (LRP) protein-related