PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 306aa MW: 34894 Da PI: 9.426

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06189g02007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.6e-08	24	68	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a +++ ++ +W ++a++++ g+t +++ + Niben101Scf06189g02007.1 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKTVVDVIRQYK 68 8******************************.****998886 PP
2	Myb_DNA-binding	45.1	2.3e-14	134	178	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Niben101Scf06189g02007.1 134 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 178 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	8.398	20	73	IPR017884	SANT domain
SMART	SM00717	5.3E-10	21	73	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.0E-11	23	78	IPR009057	Homeodomain-like
CDD	cd00167	2.16E-7	24	70	No hit	No description
Pfam	PF00249	5.7E-7	24	69	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.663	127	183	IPR017930	Myb domain
SuperFamily	SSF46689	7.18E-17	128	182	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-17	130	182	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-12	131	181	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-12	132	178	IPR009057	Homeodomain-like
Pfam	PF00249	9.8E-13	134	178	IPR001005	SANT/Myb domain
CDD	cd00167	2.92E-11	134	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEILSPAPYL SNLSWFRDEE KSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKTV 60 VDVIRQYKEL EDDVSRIEAG LITIPGYTTT SSSPFTLEWG NSHSFDGYKQ SYVVGGKRSL 120 SNRPPEQERK KGIPWTEEEH KLFLMGLKKY GKGDWRNISR NFVITRTPTQ VASHAQKYFI 180 RQLSGGKDKR RASIHDITTI NLNDSQTPSP DHQKPTSIDQ STVISQQPKS ADNAMHKMPF 240 QWSQVNNGFN YAEGTLFMSP PYGGNSYGDT KMQSQSLQQR GAMREPYFGS QSMNFQLQSA 300 QPYYHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	6e-16	25	98	11	84	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009603384.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_009603385.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_016432478.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-143	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1S3WXT5	0.0	A0A1S3WXT5_TOBAC; transcription factor DIVARICATA-like
STRING	XP_009603384.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-100	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]