PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06153g01005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 344aa MW: 38971.2 Da PI: 4.6681

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06153g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	6e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelv +yLk+k+++ ++el evi+ +d+yk++Pw+Lp k + +++ ewyfF++rdkky++g+r+nratk gyW Niben101Scf06153g01005.1 6 LPPGFRFHPTDEELVGYYLKRKTDELEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDMEWYFFCPRDKKYPNGSRTNRATKCGYW 89 79**************************.99**********95344555788*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd++v++ k ++g +ktLvfy+grap g +tdWvmheyrl Niben101Scf06153g01005.1 90 KATGKDRKVVC-KPGVIGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133 *******.7889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-61	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	6	156	IPR003441	NAC domain
Pfam	PF02365	5.6E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MGGTSLPPGF RFHPTDEELV GYYLKRKTDE LEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60 DMEWYFFCPR DKKYPNGSRT NRATKCGYWK ATGKDRKVVC KPGVIGYRKT LVFYRGRAPL 120 GDRTDWVMHE YRLCDDISQG TPSFQGPYAL CRVIKRKDIS SKTSDGRAET TSKQVECSSS 180 NQVFTSAVTT NEPLVLSDDM PSTQSTYVCN DSNYSTPIGS PYQTTQIGES ESAMETNAAN 240 LWMSQNMIHD PSKECLQGQS ISGNYPVYDF PNSTSWQPND QYDFTSSSSF QNFRGDVELS 300 GDLSGYGFAP PFSDEGTYME FYGNEDISYI GYNQSNLSGN PNLF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MGGTSLPPGF RFHPTDEELV GYYLKRKTDE LEIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DMEWYFFCPR DKKYPNGSRT NRATKCGYWK ATGKDRKVVC KPGVIGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDISQG TPSFQGPYAL CRVIKRKDIS SKTSDGRAET TSKQVECSSS  180
NQVFTSAVTT NEPLVLSDDM PSTQSTYVCN DSNYSTPIGS PYQTTQIGES ESAMETNAAN  240
LWMSQNMIHD PSKECLQGQS ISGNYPVYDF PNSTSWQPND QYDFTSSSSF QNFRGDVELS  300
GDLSGYGFAP PFSDEGTYME FYGNEDISYI GYNQSNLSGN PNLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-51	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-51	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-51	5	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-51	5	162	16	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-51	5	162	16	171	NAC domain-containing protein 19
4dul_B	9e-51	5	162	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234708.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	O49697	1e-91	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A1J6L607	0.0	A0A1J6L607_NICAT; Nac domain-containing protein 86
STRING	XP_009802261.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6256	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	7e-82	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]