PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06059g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | RAV | ||||||||
Protein Properties | Length: 395aa MW: 45300.2 Da PI: 7.8825 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.4 | 9.5e-10 | 59 | 99 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 s++kGV + +grW A+I++ ++r++lg+f ++eAaka+ Niben101Scf06059g01001.1 59 SRFKGVVPQP-NGRWGAQIYEK-----HQRIWLGTFNDEDEAAKAYX 99 689***9788.8*********3.....5**********99*****95 PP | |||||||
2 | AP2 | 34.4 | 5.5e-11 | 102 | 140 | 12 | 55 |
AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Niben101Scf06059g01001.1 102 NGRWGAQIYEK-----HQRIWLGTFSDEDEAAKAYDIAAQRFRG 140 7*********3.....5**********99*************98 PP | |||||||
3 | B3 | 98.8 | 3.3e-31 | 222 | 317 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk++ae++ + ++ +++ l led +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F Niben101Scf06059g01001.1 222 FEKEVTPSDVGKLNRLVIPKQHAERYfplE-NNSKGMLLNLEDMNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF 305 89*************************964.45689************************************************* PP EE-SSSEE..EE CS B3 83 kldgrsefelvv 94 + + +++l++ Niben101Scf06059g01001.1 306 GRCNGVDKQLYI 317 976555555655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-4 | 59 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-10 | 59 | 99 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.90E-20 | 59 | 147 | No hit | No description |
PROSITE profile | PS51032 | 18.848 | 60 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-5 | 60 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-11 | 60 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-19 | 99 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-13 | 100 | 148 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-16 | 100 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-5 | 101 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-41 | 215 | 324 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-32 | 220 | 320 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-28 | 221 | 305 | No hit | No description |
PROSITE profile | PS50863 | 14.508 | 222 | 322 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-28 | 222 | 319 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-22 | 222 | 323 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MEGSCCIEQE STTSDSPSFA PTLIPTRLSR MGSGTSSVII DAELNCSIEA ESNKKLPSSR 60 FKGVVPQPNG RWGAQIYEKH QRIWLGTFND EDEAAKAYXQ PNGRWGAQIY EKHQRIWLGT 120 FSDEDEAAKA YDIAAQRFRG KDAVTNFKPL CDSEKEEIEI SFLNSRSKAE IVDMLRKHTY 180 NDELEHSKKV CTFEKNDKRE CENALVTSFD VENMSKAREL MFEKEVTPSD VGKLNRLVIP 240 KQHAERYFPL ENNSKGMLLN LEDMNGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG 300 DIVSFGRCNG VDKQLYIDWK ARISSTITPI LDKIQDQVQP VKMVRLFGVN ICKVEDVNNI 360 VVENNMSSCS GGKRMREMEL LAFECRKKQR VIDVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-55 | 219 | 327 | 11 | 122 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789826.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q9ZWM9 | 1e-125 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A1U7XJN3 | 0.0 | A0A1U7XJN3_NICSY; AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
STRING | XP_009789826.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-125 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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